Primary Responsibilities Include:

• Develop and optimize bioinformatic analysis pipelines ensuring high maintainability and performance.
• Establish automatized solutions to store analysis results and associated pipeline metadata to facilitate extraction/reporting/visualization of information.
• Develop software validation procedures and test plans, as necessary.
• Deploy pipelines using scalable cloud solutions to accommodate increasing data footprint.
• Proactively identify opportunities/technologies for process improvement and implement enhancements to maximize efficiency in the data processing.

Desired Education and Skills:

• MS degree in Biomedical engineering, Computer Science, Computational Biology, or Bioinformatics, with at least 3 years of relevant experience. Industry experience is highly desirable.

• Excellent communication skills and the ability to converse successfully with interdisciplinary collaborators from diverse backgrounds, and experience with multidisciplinary teamwork.
• Expertise in Python is required, as well as experience with shell and R scripting.
• Previous work experience with NGS (Next Generation Sequencing) data sets. Having exposure to the essentials of genomics, genetics, and molecular biology is desirable.
• A record of accomplishment developing software solutions in a scientific or research context.
• Experience integrating pipelines with databases/data lake solutions is desirable.
• Experience with workflow management languages such as Nextflow, Snakemake (or similar) frameworks and pipeline orchestration tools (e.g., Airflow, Dagster) to support scalable and reproducible research pipelines.
• Understanding best practices across the entire software development lifecycle (SDLC) with experience with a git SaaS like GitHub/GitLab.
• Understanding of cloud computing best-practices to deploy large-scale informatics production solutions in the cloud (e.g., AWS). Examples include automation, CI/CD, containerization (e.g., Docker, Kubernetes), monitoring, and incident management.
• Recognized by former peers, colleagues, managers for attributes congruent with Sarepta values: Drive, Excellence, Resilience, Teamwork, Innovation and Compassion.
• Location is flexible within the US.

This position is remote. However, you will be expected to work on site at one of Sarepta's facilities in the United States and/or attend Company-sponsored in-person events from time to time.

Candidates must be authorized to work in the U.S.

Sarepta Therapeutics offers a competitive compensation and benefit package.

Sarepta Therapeutics is an Equal Opportunity/Affirmative Action employer and participates in e-Verify.