Demo

Bioinformatics Scientist - III (Senior)

The Fountain Group
Cambridge, MA Contractor
POSTED ON 9/18/2026
AVAILABLE BEFORE 10/17/2026
We are a national staffing firm currently seeking a Senior Bioinformatics Scientist for a prominent client of ours. Details of the position are as follows:

Job Description:

  • Pay: $95-106/hr
  • Duration: 23 months
  • Schedule: Monday-Friday
  • Location: Cambridge, MA - Onsite
  • Department: Data and Genome Sciences - Precision Genetics
  • Experience Level: 5 years of genetic data analysis experience
  • Education: Ph.D. required

This role will support target identification, patient stratification, and biomarker discovery through human genetic data analysis, machine learning, and multi-omics integration.

Responsibilities:

  • Analyze and integrate large-scale human genetic, genomic, and multi-omics datasets.
  • Perform genetic data QC, variant analysis, annotation, GWAS/PheWAS, QTL analysis, and population genetics.
  • Develop and validate machine learning models for variant prediction, patient stratification, and biomarker discovery.
  • Integrate genetic data with transcriptomic, proteomic, epigenomic, single-cell, and spatial datasets.
  • Work with large external datasets and resources such as UK Biobank, gnomAD, GTEx, ClinVar, and GWAS Catalog.
  • Develop reproducible, version-controlled workflows and document analysis methods and results.
  • Utilize HPC systems and AWS Cloud Computing to support large-scale analyses.

Qualifications:

  • Ph.D. in Genetics, Genomics, Statistical Genetics, Computational Biology, or a related field.
  • 5 years of experience in human genetic/genomic data analysis.
  • Strong knowledge of statistical genetics, including variant analysis, GWAS, QTL mapping, population genetics, and genomic annotations.
  • Demonstrated experience applying machine learning to high-dimensional biological data.
  • Hands-on experience with multi-omics data integration.
  • Proficiency in R, Python, and Bash.
  • Experience with HPC systems and AWS Cloud Computing, including IAM and S3.
  • Experience with tools such as PLINK, GATK, bcftools, VEP/ANNOVAR, REGENIE, SAIGE, and/or related genomic analysis tools.
  • Strong communication, organization, and problem-solving skills.

Preferred:

  • Experience with large-scale biobank data such as UK Biobank, All of Us, or FinnGen.
  • Experience with deep learning for genomics.
  • Experience with single-cell or spatial transcriptomics.
  • Pharmaceutical/biotechnology experience supporting drug target identification or biomarker discovery.
  • Familiarity with Nextflow, Snakemake, Docker, or Singularity.

Please note: This is an **onsite position in Cambridge, MA. Remote candidates will not be considered. Candidates must have a Ph.D.; BS/MS candidates will not meet the requirements.

Salary : $95 - $106

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