Demo

Sr Machine Learning Engineer

The Marlin Alliance
San Diego, CA Full Time
POSTED ON 12/10/2025
AVAILABLE BEFORE 2/10/2026

The Marlin Alliance, Inc. is seeking a Senior Machine Learning Engineer to design, develop, and implement advanced machine learning models and algorithms in support of naval applications. This role requires deep technical expertise in modern machine learning methods, distributed systems, cloud-native development, and software engineering best practices. The Senior ML Engineer will collaborate with multidisciplinary teams to deliver mission-focused AI solutions that integrate into operational Navy environments.

Established in 2002, The Marlin Alliance is seeking to hire highly skilled individuals to support mission critical projects within the Navy. We are looking for motivated individuals to lead and support digital transformation, data science and analytics, and automation projects for variety of Navy clients. Individuals must be able to function in a fast-paced work environment and able to adapt quickly to rapidly changing requirements and technologies. Using your comprehensive knowledge of various technologies, you will design, develop, and implement solutions to support Navy mission owners in their digital transformation journey.

Citizenship and Clearance requirements:

US Citizenship
Active TS SCI security clearance

Location:

Hybrid – based in San Diego, CA

Responsibilities:

  • Design, develop, and implement machine learning models and algorithms for naval applications.
  • Develop and deploy algorithms, mathematical models, and machine learning models into real-world operational environments.
  • Perform data preprocessing, feature engineering, model evaluation, and validation.
  • Collaborate with engineers, data scientists, and mission stakeholders to align ML solutions with operational requirements.
  • Develop cloud-native ML pipelines using AWS, Azure, Docker, Kubernetes, or equivalent platforms.
  • Implement ML solutions using frameworks such as TensorFlow, PyTorch, and scikit-learn.
  • Contribute to distributed computing and parallel processing approaches to optimize ML model performance.
  • Participate in CI/CD pipeline development, automation, and DevSecOps workflows.
  • Apply cybersecurity principles in the design and deployment of machine learning systems.
  • Provide documentation, technical reports, and engineering artifacts consistent with PMAT and government standards.
  • Stay current with advancements in machine learning, data science, and emerging technologies relevant to naval and DoD applications.

Required Skills and Experience:

  • At least 10 years of experience as a data scientist, data engineer, geospatial engineer, machine learning engineer, or software engineer.
  • Proven experience developing and deploying algorithms, mathematical models, or machine learning models in real-world applications.
  • Strong programming skills in Python.
  • Familiarity with cloud platforms (e.g., AWS, Azure) or containerization technologies (e.g., Docker, Kubernetes).
  • Familiarity with software engineering best practices, including Git.
  • Experience with ML frameworks such as TensorFlow, PyTorch, or scikit-learn.
  • Strong programming skills in Java, C , Go, or Rust.
  • Experience with distributed computing and parallel processing.
  • Experience with CI/CD pipelines and automation tools (GitHub Actions, GitLab CI, Jenkins).
  • Strong analytical, problem-solving, and communication skills.
  • Ability to work effectively in a collaborative team environment.
  • Previous experience supporting government agencies or military organizations.

Preferred Skills and Experience:

  • Experience with cloud-native architecture and software API design.
  • Experience integrating machine learning into operational DoD systems or edge computing environments.
  • Familiarity with DoD AI strategies, MLOps, or data engineering in secure environments.
  • Experience supporting NAVWAR, NIWC Pacific, or other Navy C2/ISR programs.

Education and Certification Requirements:

  • Bachelor of Science degree in Artificial Intelligence, Data Science, Computer Science, Machine Learning, or Statistics.
  • Advanced degrees (MS/PhD) in related fields are preferred but not required.
  • Additional certifications in cloud, cybersecurity, AI/ML, or DevSecOps are a plus if required by contract.

Job Classification:

Associate II
$110,000 - $180,000

Disclaimer:

This job description in no way states or implies that these are the only duties to be performed by the employee(s) incumbent in this position. Employees will be required to follow any other job-related instructions and to perform any other job-related duties requested by any person authorized to give instructions or assignments. All duties and responsibilities are essential functions and requirements and are subject to possible modification to reasonably accommodate individuals with disabilities.

To perform this job successfully, the incumbents will possess the skills, aptitudes, and abilities to perform each duty proficiently. Some requirements may exclude individuals who pose a direct threat or significant risk to the health or safety of themselves or others. The requirements listed in this document are the minimum levels of knowledge, skills, or abilities.

This document does not create an employment contract, implied or otherwise, other than an “at-will” relationship.

An Equal Opportunity Employer/Protected Veterans/Individuals with Disabilities

Salary : $110,000 - $180,000

If your compensation planning software is too rigid to deploy winning incentive strategies, it’s time to find an adaptable solution. Compensation Planning
Enhance your organization's compensation strategy with salary data sets that HR and team managers can use to pay your staff right. Surveys & Data Sets

What is the career path for a Sr Machine Learning Engineer?

Sign up to receive alerts about other jobs on the Sr Machine Learning Engineer career path by checking the boxes next to the positions that interest you.
Income Estimation: 
$119,030 - $151,900
Income Estimation: 
$149,493 - $192,976
Income Estimation: 
$184,796 - $233,226
Income Estimation: 
$179,606 - $233,815
View Core, Job Family, and Industry Job Skills and Competency Data for more than 15,000 Job Titles Skills Library

Job openings at The Marlin Alliance

  • The Marlin Alliance San Diego, CA
  • The Marlin Alliance, Inc. is seeking a Senior Software Developer with React experience to join our team in San Diego, CA. This position supports our Navy c... more
  • 13 Days Ago

  • The Marlin Alliance San Diego, CA
  • The Marlin Alliance, Inc. is seeking a TTX Data Requirements and Objective Development Lead to join our APEO Engineering Team providing direct support to t... more
  • 15 Days Ago

  • The Marlin Alliance San Diego, CA
  • The Marlin Alliance is seeking a forward-thinking AI/ML Engineer/SME in San Diego, CAto provide client support to our Navy client. This is an on-site role ... more
  • 5 Days Ago

  • The Marlin Alliance San Diego, CA
  • Palantir Foundry Solutions Architect Location: San Diego, CA Clearance: Must be able to obtain a Secret clearance The Marlin Alliance, Inc. is seeking a Se... more
  • 6 Days Ago


Not the job you're looking for? Here are some other Sr Machine Learning Engineer jobs in the San Diego, CA area that may be a better fit.

  • Amazon San Diego, CA
  • Description Do you want to join an innovative team of engineers and scientists who use terabytes of data and create state-of-the-art algorithms to push the... more
  • 21 Days Ago

  • Qualcomm Technologies San Diego, CA
  • Job Details Company: Qualcomm Technologies, Inc. Job Area: Engineering Group, Engineering Group > Machine Learning Engineering General Summary: As a leadin... more
  • 27 Days Ago

AI Assistant is available now!

Feel free to start your new journey!