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INTERNSHIP: Protein & Biologics Modeling

Dassault Systèmes
San Diego, CA Intern
POSTED ON 4/25/2026
AVAILABLE BEFORE 5/24/2026
The Protein Modeling and Simulation team within Dassault Systèmes BIOVIA develops and validates scientific modeling, simulation, and design methods for our life sciences customers. As an intern on the team, you will have access to our advanced modeling and machine learning algorithms and state of the art visualization, and use the BIOVIA Discovery Studio suite with Pipeline Pilot for the development of novel applications.

You will contribute to cutting-edge research at the intersection of computational biology, machine learning, and drug discovery, working alongside a team of scientists to develop and validate novel methods for the 3DEXPERIENCE Platform. As part of the development process, you will work with the Quality Assurance team to ensure automated test coverage of new functionality. Additionally, you will participate in discussions with Product Management and customer-facing teams on product direction and new features. Areas of interest for potential projects include but are not limited to the following:

  • Protein and biologics modeling and design pipelines using ML models
  • Application of machine learning and statistical modeling to MD simulations e.g. Markov processes, end-to-end differentiable models, etc.
  • Structure-based drug design applications: binding pocket prediction, molecular docking (energy scoring, ML models, etc.)
  • Antibody developability assessment using computational tools for properties such as viscosity, aggregation propensity, and stability
  • Actively enrolled in a Master’s Degree or PhD program with a focus on computational chemistry, structural biology, computational biology or a related field
  • Previous software development experience
  • Proficient in a programming language such as Python, C , or Java
  • Excellent communication skills in English, both verbally and in writing
  • Ability to work in a collaborative team
  • Attention to detail and scientific curiosity
  • Ability to work onsite for the duration of the internship on a hybrid schedule

Inclusion statement

In order to provide equal employment and advancement opportunities to all individuals, employment decisions at 3DS are based on merit, qualifications and abilities. 3DS is committed to a policy of non-discrimination and equal opportunity for all employees and qualified applicants without regard to race, color, religion, gender, sex (including pregnancy, childbirth or medical or common conditions related to pregnancy or childbirth), sexual orientation, gender identity, gender expression, marital status, familial status, national origin, ancestry, age (40 and above), disability, veteran status, military service, application for military service, genetic information, receipt of free medical care, or any other characteristic protected under applicable law. 3DS will make reasonable accommodations for qualified individuals with known disabilities, in accordance with applicable law. Qualified applicants with arrest or conviction records will be considered for employment in accordance with applicable state laws and local ordinances. We are committed to fair employment practices and will evaluate all candidates based on their qualifications, regardless of past arrest or conviction history.

Salary Pay Transparency

Compensation for the role will be commensurate with experience. The total expected compensation range will be between $22 and $40 per hour.

Salary : $22 - $40

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